species:   Rhsol
pid:       PID1782
parent:    novel-milR-5
paralog:   
locus:     KB317749.1:144179-144263
matures:   ['UAGUAGUACGGCCUUAAGCGC', 'CUUACAGCGGCCAUAGUAUAGCC']
srr:       SRR10747101
genome:    /Users/jax/+Genomes/Fungal_genomes/Rhsol.GCA_000334115.1_Rhisol_AG1IA_1.0_genomic.fa
alignment: /media/data/njohnson/+SeqLibraries/FunHP_libraries/Meng2021-lx.SRR10747101.cram
call:      samtools view /media/data/njohnson/+SeqLibraries/FunHP_libraries/Meng2021-lx.SRR10747101.cram KB317749.1:144179-144263

17 out of bounds
12 alignments
9 proper strand
8 stranded perfect matches

       *************************                       ***********************       
GAAGUCCGCCUUACAGCGGCCAUAGUAUAGCCUAGAUAGUCAGAUUACAUAAGCUUGUAGUAGUACGGCCUUAAGCGCCCGCUUC
(((((..((((((....((((.((.((((((.((..((((...))))..)).)))....))).)).)))).)))).))..)))))
---------------------------------------------------------UAGUAGUACGGCCUUAAGCGC------- l=21 a=6 c
---------CUUACAGCGGCCAUAGUAUAGCC----------------------------------------------------- l=23 a=0 c*
---------------------------------------------------------UAGUAGUACGGCCUUAAGCGC------- l=21 a=6 ma
---------CUUACAGCGGCCAUAGUAUAGCC----------------------------------------------------- l=23 a=0 ma*

----------UUACAGCGGCCgUAGUAUAGCC----------------------------------------------------- l=22 a=1 
----------------------------------------------ACAUAAGCUUGUAGUAGUACGG----------------- l=22 a=1 
---------------------------------------------------------UAGUAGUACGGCCUUAAGCGC------- l=21 a=6 (c,ma)
---------------------------------------------------------UAGUAGUACGGCCUUAAGCGCC------ l=22 a=1 

mb-01111
ax-1001011
ku-01
ss-111110101110
fn-101
